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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
4
ATAC-seq
4
GRO-seq
2
Hi-C
2
total RNA-seq
1
DNase-seq
Assay category
67
DNA binding
5
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
58
bam
58
fastq
56
bigWig
45
bed narrowPeak
14
tagAlign
7
bed bed3+
3
bigBed narrowPeak
2
bedpe bed3+
2
hic
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
80
Homo sapiens
Biosample type
528
tissue
93
primary cell
80
in vitro differentiated cells
31
cell line
1
stem cell
Organ
70
connective tissue
1
embryo
Project
80
AMP
Genome assembly (visualization)
57
hg19
53
GRCh38
4
hg18
Lab
80
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
GRO-seq
Hi-C
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
2
1
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
Posterior foregut
1
definitive endodermal cell
1
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