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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
43
ChIP-seq
9
ATAC-seq
1
pCHi-C
Assay category
106
Transcription
43
DNA binding
9
DNA accessibility
Target of assay
21
histone
21
histone modification
16
transcription factor
11
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
111
bigWig
107
bam
101
tsv
6
tagAlign
5
bed narrowPeak
4
bed bedgraph
1
bedpe bed3+
1
fastq
Organism
159
Homo sapiens
Biosample type
585
tissue
257
primary cell
159
in vitro differentiated cells
117
cell line
Organ
10
connective tissue
5
epithelium
3
pancreas
2
embryo
1
adipose tissue
1
heart
Project
159
AMP
Genome assembly (visualization)
115
hg19
106
GRCh38
Lab
112
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
month_released!
June, 2019
BIOSAMPLE
ASSAY
159 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
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