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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
22
total RNA-seq
12
ATAC-seq
2
Capture-C
Assay category
30
DNA binding
22
Transcription
12
DNA accessibility
Target of assay
30
histone
30
histone modification
15
broad histone mark
control
15
narrow histone mark
Date released
126
May, 2021
60
August, 2017
35
August, 2021
35
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
61
bam
53
bigWig
41
bed narrowPeak
31
fastq
22
tsv
13
tagAlign
2
bed bed3+
Organism
66
Homo sapiens
Biosample type
229
tissue
66
in vitro differentiated cells
40
cell line
3
primary cell
Organ
10
embryo
4
connective tissue
Project
66
AMP
Genome assembly (visualization)
64
hg19
61
GRCh38
Lab
62
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
in vitro differentiated cells
neural progenitor cell
14
7
10
pancreatic endoderm
6
4
definitive endodermal cell
2
2
embryonic stem cell
2
2
endocrine cell
2
2
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