Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
ATAC-seq
9
total RNA-seq
4
pCHi-C
2
Capture-C
2
Hi-C
Assay category
21
DNA binding
12
DNA accessibility
9
Transcription
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
August, 2018
Available data
39
bam
25
bed narrowPeak
24
bigWig
20
tagAlign
11
tsv
4
bedpe bed3+
2
bed bed3+
2
hic
2
ibed
Organism
50
Homo sapiens
Biosample type
269
tissue
55
cell line
50
in vitro differentiated cells
5
primary cell
4
stem cell
Organ
4
connective tissue
Project
50
AMP
Genome assembly (visualization)
39
hg19
32
GRCh38
Lab
46
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
7
inconsistent ontology term
month_released!
August, 2018
BIOSAMPLE
ASSAY
50 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell
21
10
7
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
adipocyte
1
1
osteoblast
1
1
+ See 1 more…
See all biosamples
Download