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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
total RNA-seq
40
ChIP-seq
5
ATAC-seq
2
single cell RNA-seq
Assay category
86
Transcription
40
DNA binding
5
DNA accessibility
Target of assay
20
histone
20
histone modification
15
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
129
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
87
bigWig
82
bam
81
tsv
3
bed narrowPeak
3
tagAlign
Organism
131
Homo sapiens
Biosample type
211
primary cell
131
in vitro differentiated cells
6
tissue
Organ
5
epithelium
pancreas
2
embryo
1
connective tissue
1
heart
Project
131
AMP
Genome assembly (visualization)
87
hg19
82
GRCh38
Lab
84
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
70
inconsistent ontology term
2
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
cardiomyocytes (cardiac muscle cell)
1
2
cardiac fibroblast
1
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