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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
total RNA-seq
43
ChIP-seq
5
ATAC-seq
4
pCHi-C
2
Hi-C
Assay category
86
Transcription
43
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
21
histone
21
histone modification
16
transcription factor
11
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
0
September, 2017
Available data
91
bigWig
87
bam
83
tsv
6
tagAlign
5
bed narrowPeak
4
bedpe bed3+
2
hic
2
ibed
Organism
140
Homo sapiens
Biosample type
212
primary cell
140
in vitro differentiated cells
86
tissue
32
cell line
4
stem cell
Organ
5
epithelium
3
pancreas
2
embryo
1
connective tissue
1
heart
Project
140
AMP
Genome assembly (visualization)
95
hg19
86
GRCh38
Lab
93
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
75
inconsistent ontology term
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
1
induced pluripotent stem cell
9
cardiomyocytes (cardiac muscle cell)
2
2
1
lymphocyte of B lineage (iPSC)
1
1
1
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