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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
149
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
116
May, 2021
46
August, 2017
42
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
108
fastq
100
bed narrowPeak
36
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
345
Homo sapiens
Biosample type
2610
tissue
1076
primary cell
345
in vitro differentiated cells
239
cell line
10
stem cell
Organ
75
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
345
AMP
Genome assembly (visualization)
260
hg19
228
GRCh38
4
hg18
Lab
303
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
organ_slims!
artery
large intestine
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
45
5
8
1
1
cardiomyocytes
59
embryonic stem cell
28
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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