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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
121
ChIP-seq
25
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
121
DNA binding
25
DNA accessibility
4
3D chromatin structure
Target of assay
74
histone
74
histone modification
38
narrow histone mark
36
broad histone mark
28
control
26
transcription factor
RNA binding protein
1
chromatin remodeller
Date released
123
May, 2021
41
December, 2017
39
February, 2018
38
August, 2021
18
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
227
bam
198
bigWig
126
tsv
84
fastq
83
bed narrowPeak
23
tagAlign
12
bed bed3+
12
bigBed narrowPeak
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
287
Homo sapiens
Biosample type
1710
tissue
698
primary cell
506
cell line
287
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
22
epithelium
13
liver
pancreas
1
adipose tissue
1
heart
Project
287
AMP
Genome assembly (visualization)
220
hg19
207
GRCh38
4
hg18
Lab
242
AMP-T2D consortium
42
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
pancreas
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
287 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
35
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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