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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131ChIP-seq
  • 127total RNA-seq
  • 25ATAC-seq
  • 4GRO-seq
  • 4Hi-C
  • 4pCHi-C
  • 2single cell RNA-seq
Assay category
  • 131DNA binding
  • 129Transcription
  • 25DNA accessibility
  • 43D chromatin structure
Target of assay
  • 75histone
  • 75histone modification
  • 39narrow histone mark
  • 36broad histone mark
  • 29control
  • 27transcription factor
  • 7RNA binding protein
  • 1chromatin remodeller
Date released
  • 131May, 2021
  • 43December, 2017
  • 39February, 2018
  • 38August, 2021
  • 18February, 2021
  • 8March, 2020
  • 6October, 2019
  • 5November, 2019
  • 4January, 2018
  • 3February, 2023
  • 2December, 2019
Available data
  • 232bam
  • 202bigWig
  • 126tsv
  • 87bed narrowPeak
  • 86fastq
  • 26tagAlign
  • 14bigBed narrowPeak
  • 12bed bed3+
  • 6bedpe bed3+
  • 4hic
  • 3bed bedgraph
  • 3txt
  • 2ibed
Organism
  • 297Homo sapiens
Biosample type
  • 2230tissue
  • 1049primary cell
  • 662cell line
  • 297in vitro differentiated cells
  • 9stem cell
Organ
  • connective tissue
  • 29embryo
  • 24epithelium
  • 15liver
  • 3pancreas
  • 1adipose tissue
  • 1heart
Project
  • 297AMP
Genome assembly (visualization)
  • 224hg19
  • 211GRCh38
  • 4hg18
Lab
  • 247AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 111inconsistent ontology term
  • 2audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 11inconsistent control read length
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

297 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
pancreatic endoderm1841
cardiac precursors (cardiac muscle cell)1911
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