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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
121
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
132
Transcription
121
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
chromatin remodeller
Date released
120
May, 2021
46
August, 2017
35
August, 2021
26
February, 2021
21
February, 2018
19
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
227
bam
202
bigWig
125
tsv
84
fastq
82
bed narrowPeak
26
tagAlign
19
bed bed3+
9
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
310
Homo sapiens
Biosample type
2472
tissue
965
primary cell
605
cell line
310
in vitro differentiated cells
9
stem cell
Organ
75
connective tissue
embryo
16
epithelium
7
liver
3
pancreas
1
adipose tissue
1
heart
Project
310
AMP
Genome assembly (visualization)
241
hg19
208
GRCh38
3
hg18
Lab
266
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
organ_slims!
embryo
target.investigated_as!
broad histone mark
chromatin remodeller
BIOSAMPLE
ASSAY
310 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
45
8
1
1
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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