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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
88
total RNA-seq
21
ATAC-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
159
DNA binding
90
Transcription
22
DNA accessibility
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
49
broad histone mark
48
narrow histone mark
32
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
80
May, 2021
61
August, 2017
43
December, 2017
38
February, 2018
26
February, 2021
10
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
214
bam
192
bigWig
133
fastq
101
bed narrowPeak
89
tsv
20
tagAlign
15
bigBed narrowPeak
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
282
Homo sapiens
Biosample type
2535
tissue
786
primary cell
662
cell line
282
in vitro differentiated cells
9
stem cell
Organ
77
connective tissue
27
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
282
AMP
Genome assembly (visualization)
215
hg19
195
GRCh38
4
hg18
Lab
252
AMP-T2D consortium
27
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
94
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
replication_type!
anisogenic
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
4
4
1
cardiomyocytes
3
47
embryonic stem cell
29
2
2
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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