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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 159ChIP-seq
  • 88total RNA-seq
  • 21ATAC-seq
  • 4GRO-seq
  • 4Hi-C
  • 3pCHi-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 159DNA binding
  • 90Transcription
  • 22DNA accessibility
  • 43D chromatin structure
Target of assay
  • 98histone
  • 98histone modification
  • 49broad histone mark
  • 48narrow histone mark
  • 32transcription factor
  • 29control
  • 6RNA binding protein
  • 3chromatin remodeller
Date released
  • 80May, 2021
  • 61August, 2017
  • 43December, 2017
  • 38February, 2018
  • 26February, 2021
  • 10February, 2023
  • 6March, 2020
  • 6October, 2019
  • 5November, 2019
  • 4January, 2018
  • 2December, 2019
  • 1August, 2018
Available data
  • 214bam
  • 192bigWig
  • 133fastq
  • 101bed narrowPeak
  • 89tsv
  • 20tagAlign
  • 15bigBed narrowPeak
  • 13bed bed3+
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 282Homo sapiens
Biosample type
  • 2535tissue
  • 786primary cell
  • 662cell line
  • 282in vitro differentiated cells
  • 9stem cell
Organ
  • 77connective tissue
  • 27embryo
  • 22epithelium
  • 15liver
  • 3pancreas
  • 1adipose tissue
Project
  • 282AMP
Genome assembly (visualization)
  • 215hg19
  • 195GRCh38
  • 4hg18
Lab
  • 252AMP-T2D consortium
  • 27Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 94inconsistent ontology term
  • 2audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 13inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

282 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte60441
cardiomyocytes347
embryonic stem cell2922
pancreatic endoderm1841
cardiac precursors (cardiac muscle cell)1911
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