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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
114
total RNA-seq
29
ATAC-seq
4
GRO-seq
3
pCHi-C
2
Capture-C
Assay category
171
DNA binding
114
Transcription
29
DNA accessibility
Target of assay
92
histone
92
histone modification
47
transcription factor
46
narrow histone mark
45
broad histone mark
32
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
42
August, 2021
39
February, 2018
16
December, 2017
13
February, 2023
4
February, 2021
4
January, 2018
2
March, 2020
2
October, 2019
1
August, 2018
1
November, 2019
Available data
235
bam
211
bigWig
113
fastq
107
tsv
101
bed narrowPeak
40
tagAlign
13
bed bed3+
5
bed bed3
2
bigBed narrowPeak
1
bedpe bed3+
Organism
323
Homo sapiens
Biosample type
2666
tissue
914
primary cell
323
in vitro differentiated cells
199
cell line
7
stem cell
Organ
92
connective tissue
26
embryo
9
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
323
AMP
Genome assembly (visualization)
229
hg19
210
GRCh38
4
hg18
Lab
272
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
78
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
replication_type!
isogenic
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
Capture-C
in vitro differentiated cells
adipocyte
67
5
4
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
15
4
1
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