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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70total RNA-seq
  • 66ChIP-seq
  • 34ATAC-seq
  • 4Hi-C
  • 4pCHi-C
  • 2Capture-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 72Transcription
  • 66DNA binding
  • 35DNA accessibility
  • 43D chromatin structure
Target of assay
  • 34histone
  • 34histone modification
  • 19transcription factor
  • 18broad histone mark
  • 16narrow histone mark
  • 13control
  • 7RNA binding protein
  • 1chromatin remodeller
Date released
  • 52May, 2021
  • 42August, 2021
  • 27December, 2017
  • 22February, 2021
  • 9February, 2023
  • 8August, 2017
  • 8March, 2020
  • 8October, 2019
  • 4November, 2019
  • 2December, 2019
  • 1February, 2018
Available data
  • 133bam
  • 115bigWig
  • 66tsv
  • 62bed narrowPeak
  • 36fastq
  • 24bed bed3+
  • 20tagAlign
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 6bedpe bed3+
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 183Homo sapiens
Biosample type
  • 476primary cell
  • 463cell line
  • 353tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 25connective tissue
  • 17epithelium
  • 15liver
  • 5embryo
  • 1heart
Project
  • 183AMP
Genome assembly (visualization)
  • 150hg19
  • 125GRCh38
Lab
  • 156AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 58inconsistent ontology term
  • 2audit script error
Audit category:
  • 8inconsistent control read length
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

183 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51151
cardiac precursors (cardiac muscle cell)1911
adipocyte17811
hepatocyte15
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