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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
66
ChIP-seq
34
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
72
Transcription
66
DNA binding
35
DNA accessibility
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
19
transcription factor
18
broad histone mark
16
narrow histone mark
13
control
7
RNA binding protein
1
chromatin remodeller
Date released
52
May, 2021
42
August, 2021
27
December, 2017
22
February, 2021
9
February, 2023
8
August, 2017
8
March, 2020
8
October, 2019
4
November, 2019
2
December, 2019
1
February, 2018
Available data
133
bam
115
bigWig
66
tsv
62
bed narrowPeak
36
fastq
24
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
183
Homo sapiens
Biosample type
476
primary cell
463
cell line
353
tissue
183
in vitro differentiated cells
4
stem cell
Organ
25
connective tissue
17
epithelium
15
liver
5
embryo
1
heart
Project
183
AMP
Genome assembly (visualization)
150
hg19
125
GRCh38
Lab
156
AMP-T2D consortium
20
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
58
inconsistent ontology term
2
audit script error
Audit category:
8
inconsistent control read length
replication_type!
unreplicated
BIOSAMPLE
ASSAY
183 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
neural progenitor cell
7
21
10
embryonic stem cell
5
11
5
1
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
1
7
8
1
1
hepatocyte
15
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