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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 48total RNA-seq
  • 39ChIP-seq
  • 21ATAC-seq
  • 2Capture-C
  • 2pCHi-C
Assay category
  • 48Transcription
  • 39DNA binding
  • 21DNA accessibility
Target of assay
  • 17transcription factor
  • 14histone
  • 14histone modification
  • 8control
  • 7broad histone mark
  • 7narrow histone mark
  • 5RNA binding protein
Date released
  • 52May, 2021
  • 42August, 2021
  • 7August, 2017
  • 6February, 2023
  • 2March, 2020
  • 2October, 2019
  • 1February, 2018
Available data
  • 77bam
  • 67bigWig
  • 42tsv
  • 31bed narrowPeak
  • 20tagAlign
  • 12bed bed3+
  • 8fastq
  • 2bigBed narrowPeak
Organism
  • 112Homo sapiens
Biosample type
  • 302primary cell
  • 242tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 20connective tissue
  • 2embryo
  • 2epithelium
  • 1heart
Project
  • 112AMP
Genome assembly (visualization)
  • 82hg19
  • 70GRCh38
Lab
  • 88AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 21inconsistent ontology term
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

112 results

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total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
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