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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 48total RNA-seq
  • 39ChIP-seq
  • 21ATAC-seq
  • 2Capture-C
  • 2pCHi-C
Assay category
  • 48Transcription
  • 39DNA binding
  • 21DNA accessibility
Target of assay
  • 17transcription factor
  • 14histone
  • 14histone modification
  • 8control
  • 7broad histone mark
  • 7narrow histone mark
  • 5RNA binding protein
Date released
  • 52May, 2021
  • 42August, 2021
  • 7August, 2017
  • 6February, 2023
  • 2March, 2020
  • 2October, 2019
  • 1February, 2018
Available data
  • 77bam
  • 67bigWig
  • 42tsv
  • 31bed narrowPeak
  • 20tagAlign
  • 12bed bed3+
  • 8fastq
  • 2bigBed narrowPeak
Organism
  • 112Homo sapiens
Biosample type
  • 302primary cell
  • 242tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 20connective tissue
  • 2embryo
  • 2epithelium
  • 1heart
Project
  • 112AMP
Genome assembly (visualization)
  • 82hg19
  • 70GRCh38
Lab
  • 88AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 21inconsistent ontology term
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

112 results

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total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
cardiomyocytes (cardiac muscle cell)11
immature adipocyte11
osteoblast11
preadipocyte11
cardiac fibroblast1
endothelial cell1
hematopoietic multipotent progenitor cell1
intermediate cardiomyocytes1
intermediate endothelial cell1
intermediate smooth muscle cell1
islet precursor cell1
mesodermal cell (lineage marker-negative)1
mesodermal cell (pacemaker intermediate)1
smooth muscle cell1
stem cell1
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