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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
22
total RNA-seq
13
ATAC-seq
4
Hi-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
27
DNA binding
24
Transcription
14
DNA accessibility
4
3D chromatin structure
Target of assay
20
histone
20
histone modification
11
broad histone mark
9
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
27
December, 2017
22
February, 2021
6
March, 2020
6
October, 2019
4
November, 2019
3
February, 2023
2
December, 2019
1
August, 2017
Available data
56
bam
48
bigWig
31
bed narrowPeak
28
fastq
24
tsv
15
bigBed narrowPeak
12
bed bed3+
7
bed bedgraph
6
bedpe bed3+
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
71
Homo sapiens
Biosample type
463
cell line
174
primary cell
111
tissue
71
in vitro differentiated cells
3
stem cell
Organ
15
epithelium
15
liver
5
connective tissue
3
embryo
Project
71
AMP
Genome assembly (visualization)
68
hg19
55
GRCh38
Lab
68
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
37
inconsistent ontology term
2
audit script error
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
cardiomyocytes (cardiac muscle cell)
2
1
2
1
2
adipocyte
4
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
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