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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 27ChIP-seq
  • 22total RNA-seq
  • 13ATAC-seq
  • 4Hi-C
  • 2pCHi-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 27DNA binding
  • 24Transcription
  • 14DNA accessibility
  • 43D chromatin structure
Target of assay
  • 20histone
  • 20histone modification
  • 11broad histone mark
  • 9narrow histone mark
  • 5control
  • 2RNA binding protein
  • 2transcription factor
  • 1chromatin remodeller
Date released
  • 27December, 2017
  • 22February, 2021
  • 6March, 2020
  • 6October, 2019
  • 4November, 2019
  • 3February, 2023
  • 2December, 2019
  • 1August, 2017
Available data
  • 56bam
  • 48bigWig
  • 31bed narrowPeak
  • 28fastq
  • 24tsv
  • 15bigBed narrowPeak
  • 12bed bed3+
  • 7bed bedgraph
  • 6bedpe bed3+
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 71Homo sapiens
Biosample type
  • 463cell line
  • 174primary cell
  • 111tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 15epithelium
  • 15liver
  • 5connective tissue
  • 3embryo
Project
  • 71AMP
Genome assembly (visualization)
  • 68hg19
  • 55GRCh38
Lab
  • 68AMP-T2D consortium
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 37inconsistent ontology term
  • 2audit script error
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

71 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1911
hepatocyte15
cardiomyocytes (cardiac muscle cell)21212
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
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