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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
66
total RNA-seq
8
ATAC-seq
4
GRO-seq
1
pCHi-C
Assay category
132
DNA binding
66
Transcription
8
DNA accessibility
Target of assay
78
histone
78
histone modification
39
narrow histone mark
38
broad histone mark
30
transcription factor
24
control
4
RNA binding protein
2
chromatin remodeller
Date released
80
May, 2021
60
August, 2017
38
February, 2018
16
December, 2017
7
February, 2023
4
February, 2021
4
January, 2018
1
August, 2018
1
November, 2019
Available data
158
bam
144
bigWig
105
fastq
70
bed narrowPeak
65
tsv
20
tagAlign
5
bed bed3
1
bed bed3+
1
bedpe bed3+
Organism
211
Homo sapiens
Biosample type
2424
tissue
612
primary cell
211
in vitro differentiated cells
199
cell line
6
stem cell
Organ
72
connective tissue
24
embryo
7
epithelium
3
pancreas
1
adipose tissue
Project
211
AMP
Genome assembly (visualization)
147
hg19
140
GRCh38
4
hg18
Lab
184
AMP-T2D consortium
27
Kyle Gaulton, UCSD
Audit category:
57
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
in vitro differentiated cells
adipocyte
60
4
cardiomyocytes
3
47
embryonic stem cell
29
2
1
pancreatic endoderm
15
4
1
definitive endodermal cell
5
2
1
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