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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 132ChIP-seq
  • 66total RNA-seq
  • 8ATAC-seq
  • 4GRO-seq
  • 1pCHi-C
Assay category
  • 132DNA binding
  • 66Transcription
  • 8DNA accessibility
Target of assay
  • 78histone
  • 78histone modification
  • 39narrow histone mark
  • 38broad histone mark
  • 30transcription factor
  • 24control
  • 4RNA binding protein
  • 2chromatin remodeller
Date released
  • 80May, 2021
  • 60August, 2017
  • 38February, 2018
  • 16December, 2017
  • 7February, 2023
  • 4February, 2021
  • 4January, 2018
  • 1August, 2018
  • 1November, 2019
Available data
  • 158bam
  • 144bigWig
  • 105fastq
  • 70bed narrowPeak
  • 65tsv
  • 20tagAlign
  • 5bed bed3
  • 1bed bed3+
  • 1bedpe bed3+
Organism
  • 211Homo sapiens
Biosample type
  • 2424tissue
  • 612primary cell
  • 211in vitro differentiated cells
  • 199cell line
  • 6stem cell
Organ
  • 72connective tissue
  • 24embryo
  • 7epithelium
  • 3pancreas
  • 1adipose tissue
Project
  • 211AMP
Genome assembly (visualization)
  • 147hg19
  • 140GRCh38
  • 4hg18
Lab
  • 184AMP-T2D consortium
  • 27Kyle Gaulton, UCSD
Audit category:
  • 57inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 9inconsistent control read length
BIOSAMPLE
ASSAY

211 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
in vitro differentiated cells
adipocyte604
cardiomyocytes347
embryonic stem cell2921
pancreatic endoderm1541
definitive endodermal cell521
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