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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 161ChIP-seq
  • 136total RNA-seq
  • 42ATAC-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 161DNA binding
  • 138Transcription
  • 43DNA accessibility
  • 43D chromatin structure
Target of assay
  • 112histone
  • 112histone modification
  • 56broad histone mark
  • 55narrow histone mark
  • 49transcription factor
  • control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 126May, 2021
  • 60August, 2017
  • 35August, 2021
  • 35December, 2017
  • 31February, 2018
  • 26February, 2021
  • 16February, 2023
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 4January, 2018
  • 2December, 2019
  • 1August, 2018
Available data
  • 261bam
  • 259bigWig
  • 132bed narrowPeak
  • 131tsv
  • 119fastq
  • 30tagAlign
  • 20bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 357Homo sapiens
Biosample type
  • 2590tissue
  • 1053primary cell
  • 579cell line
  • 357in vitro differentiated cells
  • 9stem cell
Organ
  • 89connective tissue
  • 22embryo
  • 20epithelium
  • 14liver
  • 2pancreas
  • 1adipose tissue
  • 1heart
Project
  • 357AMP
Genome assembly (visualization)
  • 292hg19
  • 260GRCh38
  • 4hg18
Lab
  • 308AMP-T2D consortium
  • 42Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 113inconsistent ontology term
  • 2audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 17inconsistent control read length
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

357 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte595811
cardiomyocytes359
embryonic stem cell34761
neural progenitor cell14710
cardiac precursors (cardiac muscle cell)1911
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