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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136total RNA-seq
  • 86ChIP-seq
  • 42ATAC-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 138Transcription
  • 86DNA binding
  • 43DNA accessibility
  • 43D chromatin structure
Target of assay
  • 112histone
  • histone modification
  • 56broad histone mark
  • 55narrow histone mark
  • 49transcription factor
  • 37control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 111May, 2021
  • 31August, 2017
  • 28August, 2021
  • 26February, 2021
  • 23February, 2018
  • 19December, 2017
  • 16February, 2023
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 4January, 2018
  • 2December, 2019
  • 1August, 2018
Available data
  • 212bam
  • 181bigWig
  • 131tsv
  • 76fastq
  • 54bed narrowPeak
  • 17bed bed3+
  • 14tagAlign
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 5bigBed narrowPeak
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 282Homo sapiens
Biosample type
  • 2149tissue
  • 851primary cell
  • 624cell line
  • 282in vitro differentiated cells
  • 8stem cell
Organ
  • 60connective tissue
  • 17embryo
  • 9epithelium
  • 3liver
  • 2pancreas
  • 1adipose tissue
  • 1heart
Project
  • 282AMP
Genome assembly (visualization)
  • 220hg19
  • 187GRCh38
  • 4hg18
Lab
  • 248AMP-T2D consortium
  • 27Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 113inconsistent ontology term
  • 2audit script error
Audit category:
  • 5missing controlled_by
Audit category:
  • 10inconsistent control read length
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

282 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes593
adipocyte530811
embryonic stem cell71861
neural progenitor cell7710
cardiac precursors (cardiac muscle cell)1911
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