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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 112ChIP-seq
Assay category
  • 112DNA binding
Target of assay
  • 112histone
  • 112histone modification
  • 56broad histone mark
  • 55narrow histone mark
  • 49transcription factor
  • 37control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 37August, 2017
  • 24December, 2017
  • 21May, 2021
  • 16February, 2018
  • 14August, 2021
Available data
  • 79bam
  • 78bed narrowPeak
  • 78bigWig
  • 65fastq
  • 26tagAlign
  • 12bigBed narrowPeak
  • 8bed bed3+
Organism
  • 112Homo sapiens
Biosample type
  • 627tissue
  • 237primary cell
  • 112in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 37connective tissue
  • 15epithelium
  • 12embryo
  • 12liver
  • 1pancreas
Project
  • 112AMP
Genome assembly (visualization)
  • 78GRCh38
  • 77hg19
Lab
  • 92AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 7inconsistent control read length
BIOSAMPLE
ASSAY

112 results

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ChIP-seq
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
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