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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
137
ChIP-seq
56
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
247
DNA accessibility
137
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
103
histone
103
histone modification
55
narrow histone mark
48
broad histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
460
bam
442
bigWig
409
fastq
218
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
833
Homo sapiens
Biosample type
2560
tissue
833
primary cell
cell line
261
in vitro differentiated cells
10
stem cell
Organ
384
epithelium
346
pancreas
32
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
455
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
402
hg19
342
GRCh38
Lab
455
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
files.file_type!
bigBed broadPeak
month_released!
May, 2021
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
833 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
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