Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
185
single cell RNA-seq
102
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
379
Transcription
275
DNA accessibility
102
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
55
September, 2018
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
43
August, 2017
31
July, 2019
22
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
404
bam
388
bigWig
376
fastq
218
tsv
153
zippedFastqFolder
120
bed narrowPeak
88
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
824
Homo sapiens
Biosample type
2428
tissue
824
primary cell
cell line
216
in vitro differentiated cells
9
stem cell
Organ
375
epithelium
319
pancreas
34
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
446
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
390
hg19
335
GRCh38
Lab
446
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
files.file_type!
csv
month_released!
May, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
824 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
10
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
10
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
4
1
+ See 86 more…
See all biosamples
Download