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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ATAC-seq
62
total RNA-seq
58
single cell RNA-seq
52
ChIP-seq
41
WGBS
29
snATAC-seq
24
DNase-seq
9
Hi-C
8
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
207
DNA accessibility
121
Transcription
52
DNA binding
49
DNA methylation
9
3D chromatin structure
Target of assay
38
histone
38
histone modification
19
broad histone mark
19
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
May, 2021
147
May, 2020
134
May, 2022
38
June, 2019
34
October, 2019
23
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
5
December, 2019
5
May, 2019
4
April, 2018
4
August, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
424
bam
410
bigWig
fastq
203
tsv
153
zippedFastqFolder
151
bed narrowPeak
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
438
Homo sapiens
Biosample type
1856
tissue
438
primary cell
cell line
80
in vitro differentiated cells
5
stem cell
Organ
168
epithelium
88
pancreas
36
kidney
connective tissue
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
229
AMP
155
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
187
hg19
129
GRCh38
Lab
229
AMP-T2D consortium
155
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
4
audit script error
biosample_type!
cell line
files.file_type!
fastq
month_released!
May, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
438 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
small RNA-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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