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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
168
ATAC-seq
123
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
27
DNase-seq
17
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
225
DNA accessibility
184
Transcription
180
DNA binding
50
DNA methylation
10
3D chromatin structure
Target of assay
162
histone
162
histone modification
89
broad histone mark
73
narrow histone mark
17
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
47
June, 2019
34
October, 2019
26
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
603
bigWig
597
bam
fastq
289
bed narrowPeak
266
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
666
Homo sapiens
Biosample type
2087
tissue
666
primary cell
252
in vitro differentiated cells
cell line
6
stem cell
Organ
168
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
306
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
392
hg19
297
GRCh38
Lab
271
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
4
audit script error
biosample_type!
cell line
files.file_type!
fastq
organ_slims!
heart
BIOSAMPLE
ASSAY
666 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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