Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ATAC-seq
186
single cell RNA-seq
126
ChIP-seq
123
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
311
Transcription
266
DNA accessibility
126
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
88
histone
88
histone modification
48
narrow histone mark
40
broad histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
353
bam
336
fastq
323
bigWig
153
zippedFastqFolder
148
tsv
132
bed narrowPeak
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
32
bed bed3+
12
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
772
Homo sapiens
Biosample type
2496
tissue
772
primary cell
cell line
305
in vitro differentiated cells
10
stem cell
Organ
341
epithelium
274
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
447
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
338
hg19
281
GRCh38
Lab
447
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2021
September, 2018
BIOSAMPLE
ASSAY
772 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
32
12
13
42
31
1
pancreatic beta cell
19
12
13
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
+ See 86 more…
See all biosamples
Download