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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
3
single cell RNA-seq
Assay category
269
DNA binding
3
Transcription
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
51
August, 2017
32
September, 2018
27
June, 2019
24
October, 2019
6
November, 2017
4
August, 2021
4
May, 2019
3
July, 2019
Available data
240
bigWig
235
bam
216
bed narrowPeak
100
tagAlign
89
fastq
47
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
3
tsv
Organism
272
Homo sapiens
Biosample type
815
tissue
272
primary cell
149
in vitro differentiated cells
cell line
3
stem cell
Organ
87
epithelium
70
pancreas
21
vasculature
19
blood vessel
17
vein
13
kidney
11
connective tissue
10
musculature of body
9
brain
4
heart
4
liver
2
eye
Project
188
AMP
84
T1D
Genome assembly (visualization)
240
hg19
201
GRCh38
Lab
155
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
single cell RNA-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
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