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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
single cell RNA-seq
173
ATAC-seq
166
total RNA-seq
56
snATAC-seq
47
WGBS
39
ChIP-seq
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
354
Transcription
261
DNA accessibility
57
DNA methylation
39
DNA binding
10
3D chromatin structure
Target of assay
histone
87
histone modification
48
narrow histone mark
39
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
301
bam
295
fastq
286
bigWig
192
tsv
153
zippedFastqFolder
52
bed narrowPeak
48
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
tagAlign
1
bed bed3
1
csv
1
tar
Organism
722
Homo sapiens
Biosample type
2110
tissue
722
primary cell
cell line
171
in vitro differentiated cells
8
stem cell
Organ
300
epithelium
248
pancreas
30
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
344
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
288
hg19
233
GRCh38
Lab
344
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
biosample_type!
cell line
month_released!
May, 2021
September, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
722 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
12
32
42
31
6
1
pancreatic beta cell
12
19
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
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