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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
132
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
1
DNase-seq
Assay category
434
Transcription
255
DNA accessibility
132
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
202
histone
202
histone modification
broad histone mark
98
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
35
August, 2017
31
July, 2019
23
June, 2019
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
490
bam
482
bigWig
376
fastq
268
tsv
170
bed narrowPeak
153
zippedFastqFolder
80
bigBed narrowPeak
49
tagAlign
39
bed broadPeak
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
905
Homo sapiens
Biosample type
2099
tissue
905
primary cell
567
cell line
in vitro differentiated cells
9
stem cell
Organ
336
epithelium
319
pancreas
29
connective tissue
13
kidney
10
brain
10
heart
10
liver
9
musculature of body
8
blood
8
bodily fluid
8
vasculature
6
blood vessel
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
420
AMP
324
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
462
hg19
389
GRCh38
Lab
405
AMP-T2D consortium
324
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
30
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
905 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
DNase-seq
primary cell
pancreatic alpha cell
52
35
12
10
31
1
Langerhans cell
85
48
monocyte
54
15
41
1
1
pancreatic beta cell
21
23
12
10
16
1
exocrine cell
39
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