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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
3
ATAC-seq
1
DNase-seq
1
RRBS
Assay category
71
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
46
histone
46
histone modification
28
narrow histone mark
21
control
18
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
113
bam
93
bigWig
80
bed narrowPeak
66
bigBed narrowPeak
58
fastq
38
bed broadPeak
bigBed broadPeak
24
bed bed3+
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
76
Homo sapiens
Biosample type
284
tissue
76
primary cell
in vitro differentiated cells
Organ
41
pancreas
35
epithelium
12
connective tissue
10
musculature of body
5
heart
3
eye
3
kidney
Project
76
AMP
Genome assembly (visualization)
56
hg19
53
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle satellite cell
8
mesenchymal stem cell
7
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