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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
3
single cell RNA-seq
Assay category
253
DNA binding
3
Transcription
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
121
May, 2021
40
August, 2017
32
September, 2018
27
June, 2019
22
October, 2019
4
August, 2021
4
May, 2019
3
July, 2019
3
November, 2017
Available data
240
bigWig
235
bam
216
bed narrowPeak
100
tagAlign
89
fastq
47
bigBed narrowPeak
16
bed broadPeak
bigBed broadPeak
3
bed bed3+
3
tsv
Organism
256
Homo sapiens
Biosample type
814
tissue
256
primary cell
in vitro differentiated cells
107
cell line
3
stem cell
Organ
83
epithelium
70
pancreas
17
vasculature
16
blood vessel
15
vein
13
kidney
11
connective tissue
10
musculature of body
6
brain
4
heart
4
liver
2
eye
Project
172
AMP
84
T1D
Genome assembly (visualization)
224
hg19
187
GRCh38
Lab
139
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
single cell RNA-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic alpha cell
13
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