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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
pCHi-C
13
ATAC-seq
2
ChIP-seq
1
DNAme array
1
total RNA-seq
Assay category
13
DNA accessibility
2
DNA binding
1
DNA methylation
1
Transcription
Target of assay
4
histone
4
histone modification
2
broad histone mark
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
33
May, 2021
13
August, 2017
10
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
109
bam
77
bed narrowPeak
52
tsv
44
tagAlign
2
bed bed3+
Organism
33
Homo sapiens
Biosample type
in vitro differentiated cells
33
primary cell
16
cell line
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
Project
17
AMP
16
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
17
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
33 results
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pCHi-C
ATAC-seq
ChIP-seq
DNAme array
total RNA-seq
primary cell
monocyte
1
13
1
1
CD4-positive, alpha-beta T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
neutrophil
1
1
B cell
1
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