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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
197
ATAC-seq
195
ChIP-seq
187
single cell RNA-seq
48
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
5
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
251
DNA accessibility
195
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
180
histone
180
histone modification
98
broad histone mark
82
narrow histone mark
14
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
520
bigWig
496
bam
351
fastq
270
tsv
215
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
43
bigBed narrowPeak
13
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
966
Homo sapiens
Biosample type
2322
tissue
966
primary cell
662
cell line
in vitro differentiated cells
10
stem cell
Organ
357
epithelium
305
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
16
brain
12
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
445
AMP
324
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
541
hg19
447
GRCh38
Lab
410
AMP-T2D consortium
324
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
32
missing controlled_by
biosample_type!
in vitro differentiated cells
month_released!
August, 2017
January, 2021
June, 2019
BIOSAMPLE
ASSAY
966 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
15
85
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
2
33
1
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