Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
146
ChIP-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
431
Transcription
283
DNA accessibility
146
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
45
June, 2019
43
April, 2018
43
August, 2017
27
July, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
488
bam
475
bigWig
370
fastq
265
tsv
171
bed narrowPeak
153
zippedFastqFolder
76
bigBed narrowPeak
49
tagAlign
35
bed broadPeak
35
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
941
Homo sapiens
Biosample type
2377
tissue
941
primary cell
577
cell line
in vitro differentiated cells
9
stem cell
Organ
372
epithelium
316
pancreas
35
connective tissue
31
kidney
28
vasculature
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
456
AMP
324
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
489
hg19
424
GRCh38
Lab
441
AMP-T2D consortium
324
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
30
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
August, 2018
organ_slims!
blood vessel
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
941 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
35
10
10
31
1
Langerhans cell
85
48
monocyte
54
15
41
1
1
pancreatic beta cell
21
23
12
10
16
1
exocrine cell
39
+ See 88 more…
See all biosamples
Download