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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
273
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
9
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
273
DNA binding
261
DNA accessibility
57
DNA methylation
6
3D chromatin structure
Target of assay
233
histone
233
histone modification
121
broad histone mark
112
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
28
June, 2019
26
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
610
bigWig
605
bam
409
fastq
292
bed narrowPeak
270
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1047
Homo sapiens
Biosample type
2518
tissue
1047
primary cell
659
cell line
369
in vitro differentiated cells
stem cell
Organ
385
epithelium
346
pancreas
31
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
518
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
595
hg19
504
GRCh38
Lab
485
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
stem cell
files.file_type!
bed bed3+
lab.title!
Maike Sander, UCSD
organ_slims!
eye
BIOSAMPLE
ASSAY
1047 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
exocrine cell
39
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