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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
83
ATAC-seq
54
single cell RNA-seq
35
snATAC-seq
32
ChIP-seq
17
pCHi-C
10
RRBS
6
Hi-C
6
WGBS
2
DNase-seq
1
DNAme array
Assay category
149
Transcription
120
DNA accessibility
32
DNA binding
17
DNA methylation
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
35
May, 2021
13
August, 2017
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
341
Homo sapiens
Biosample type
957
tissue
341
primary cell
140
cell line
135
in vitro differentiated cells
stem cell
Organ
95
epithelium
74
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
180
HPAP
136
AMP
24
T1D
1
ITG
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
180
Klaus Kaestner, Upenn
136
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
16
inconsistent ontology term
biosample_type!
stem cell
files.file_type!
bigWig
month_released!
May, 2022
organ_slims!
thymus
BIOSAMPLE
ASSAY
341 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
RRBS
Hi-C
WGBS
DNase-seq
DNAme array
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
6
1
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
CD4-positive, alpha-beta memory T cell
22
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