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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
RRBS
3
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
280
DNA accessibility
262
DNA binding
57
DNA methylation
3
3D chromatin structure
Target of assay
226
histone
226
histone modification
116
broad histone mark
110
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
33
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
577
bigWig
568
bam
406
fastq
274
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
90
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
1038
Homo sapiens
Biosample type
2104
tissue
1038
primary cell
660
cell line
293
in vitro differentiated cells
stem cell
Organ
396
epithelium
343
pancreas
connective tissue
35
vasculature
31
kidney
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
514
AMP
321
HPAP
203
T1D
Genome assembly (visualization)
585
hg19
499
GRCh38
Lab
479
AMP-T2D consortium
321
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
Audit category:
38
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
stem cell
files.file_type!
hic
month_released!
May, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1038 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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