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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
3
Hi-C
Assay category
98
DNA binding
3
3D chromatin structure
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
control
Date released
84
May, 2021
11
August, 2017
3
August, 2021
3
October, 2022
Available data
603
bigWig
577
bam
393
fastq
295
bed narrowPeak
267
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
101
Homo sapiens
Biosample type
186
tissue
101
primary cell
30
in vitro differentiated cells
16
cell line
Organ
6
epithelium
3
liver
3
pancreas
Project
84
T1D
14
AMP
3
HPAP
Genome assembly (visualization)
101
hg19
98
GRCh38
Lab
84
Kyle Gaulton, UCSD
14
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
stem cell
target.investigated_as!
control
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
Hi-C
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
pancreatic acinar cell
1
pancreatic alpha cell
1
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