Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
7
DNase-seq
5
total RNA-seq
4
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
13
DNA binding
8
Transcription
7
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
7
control
6
histone
6
histone modification
5
narrow histone mark
3
RNA binding protein
3
transcription factor
1
broad histone mark
Date released
9
July, 2019
9
November, 2017
7
June, 2019
5
December, 2019
4
August, 2021
October, 2019
Available data
31
bigWig
28
bam
16
bed narrowPeak
14
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
13
bigBed narrowPeak
9
fastq
8
tsv
4
hdf5
4
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
34
Homo sapiens
Biosample type
534
tissue
401
cell line
34
primary cell
15
in vitro differentiated cells
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
34
AMP
Genome assembly (visualization)
33
hg19
24
GRCh38
Lab
34
AMP-T2D consortium
biosample_type!
stem cell
month_released!
October, 2019
BIOSAMPLE
ASSAY
34 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
hepatocyte
4
1
5
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 5 more…
See all biosamples
Download