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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
12
ATAC-seq
4
ChIP-seq
Assay category
76
Transcription
12
DNA accessibility
4
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
0
February, 2018
Available data
76
fastq
12
tsv
4
bam
4
tagAlign
3
bed bed3+
3
bed narrowPeak
3
bigWig
Organism
92
Homo sapiens
Biosample type
tissue
97
in vitro differentiated cells
92
primary cell
50
cell line
Organ
41
epithelium
37
pancreas
4
liver
Project
76
HPAP
16
AMP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
76
Klaus Kaestner, Upenn
16
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ATAC-seq
ChIP-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
hepatocyte
4
gabaergic neuron
3
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