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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
21
pCHi-C
10
RRBS
7
Hi-C
3
DNase-seq
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
283
Transcription
191
DNA binding
189
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
165
histone
165
histone modification
88
broad histone mark
77
narrow histone mark
24
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
31
July, 2019
31
June, 2019
30
October, 2019
11
July, 2018
10
April, 2018
8
January, 2021
5
December, 2019
5
March, 2020
5
May, 2019
5
November, 2020
4
August, 2017
4
August, 2021
3
December, 2017
3
March, 2023
3
November, 2017
2
June, 2018
1
January, 2018
1
November, 2018
1
September, 2018
Available data
424
bigWig
418
bam
229
bed narrowPeak
166
tsv
155
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
bigBed broadPeak
40
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
701
Homo sapiens
Biosample type
2100
tissue
693
primary cell
512
cell line
390
in vitro differentiated cells
10
stem cell
Organ
384
epithelium
pancreas
34
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
324
AMP
204
T1D
172
HPAP
2
community
1
ITG
Genome assembly (visualization)
404
hg19
302
GRCh38
1
hg18
Lab
289
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
2
Anna Gloyn, Oxford
1
ITG
Audit category:
47
inconsistent ontology term
28
audit script error
Audit category:
3
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
organ_slims!
pancreas
pituitary gland
BIOSAMPLE
ASSAY
703 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
+ See 79 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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