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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
159
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
438
Transcription
288
DNA accessibility
159
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
239
histone
239
histone modification
broad histone mark
116
narrow histone mark
36
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
43
August, 2017
31
July, 2019
22
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
March, 2023
3
May, 2019
3
October, 2022
2
December, 2017
2
October, 2018
1
January, 2018
1
November, 2018
Available data
511
bam
497
bigWig
379
fastq
274
tsv
184
bed narrowPeak
153
zippedFastqFolder
88
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
38
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
973
Homo sapiens
Biosample type
2470
tissue
966
primary cell
610
cell line
336
in vitro differentiated cells
9
stem cell
Organ
375
epithelium
319
pancreas
36
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
488
AMP
324
HPAP
160
T1D
2
community
1
ITG
Genome assembly (visualization)
512
hg19
442
GRCh38
1
hg18
Lab
473
AMP-T2D consortium
324
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
ibed
lab.title!
Bing Ren, UCSD
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
975 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
pancreatic alpha cell
52
35
12
10
31
1
Langerhans cell
85
48
monocyte
54
15
41
1
1
pancreatic beta cell
21
23
12
10
16
1
exocrine cell
39
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stem cell
hESC
2
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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