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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
40
ChIP-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
114
DNA accessibility
40
DNA binding
Target of assay
histone
205
histone modification
104
narrow histone mark
101
broad histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
90
May, 2020
65
May, 2021
48
July, 2018
43
April, 2018
40
September, 2018
36
June, 2019
20
August, 2017
18
July, 2019
10
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
May, 2019
2
October, 2018
1
August, 2021
1
December, 2017
Available data
407
bam
384
bigWig
338
fastq
274
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
35
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
407
Homo sapiens
Biosample type
1442
tissue
547
cell line
406
primary cell
212
in vitro differentiated cells
1
stem cell
Organ
176
epithelium
136
pancreas
28
connective tissue
21
kidney
15
vasculature
14
brain
11
blood vessel
10
heart
9
liver
5
musculature of body
5
vein
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
311
AMP
96
T1D
Genome assembly (visualization)
375
hg19
328
GRCh38
Lab
311
AMP-T2D consortium
96
Kyle Gaulton, UCSD
Audit category:
28
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
407 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
15
pancreatic beta cell
10
12
7
6
pancreatic alpha cell
10
12
6
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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stem cell
hESC
1
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