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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
22
ChIP-seq
16
DNase-seq
1
FAIRE-seq
Assay category
39
DNA accessibility
22
DNA binding
Target of assay
17
histone
17
histone modification
10
narrow histone mark
7
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
18
June, 2019
14
September, 2018
13
October, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
242
bam
238
fastq
231
bigWig
116
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
61
Homo sapiens
Biosample type
61
primary cell
14
in vitro differentiated cells
1
cell line
0
stem cell
Organ
61
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
61
AMP
Genome assembly (visualization)
60
GRCh38
55
hg19
Lab
61
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
61 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
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