Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
208
total RNA-seq
186
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
5
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
393
Transcription
274
DNA accessibility
250
DNA binding
49
DNA methylation
5
3D chromatin structure
Target of assay
207
histone
207
histone modification
106
broad histone mark
101
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
October, 2022
2
March, 2023
2
October, 2018
1
January, 2018
1
November, 2018
Available data
522
bam
522
bigWig
340
fastq
251
bed narrowPeak
230
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
5
hic
4
bedpe bed3+
3
cool
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
tar
Organism
991
Homo sapiens
Biosample type
2700
tissue
983
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
332
epithelium
274
pancreas
32
connective tissue
32
vasculature
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
463
AMP
324
HPAP
204
T1D
2
community
Genome assembly (visualization)
528
hg19
448
GRCh38
1
hg18
Lab
428
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
ITG
month_released!
July, 2019
September, 2018
BIOSAMPLE
ASSAY
993 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
RRBS
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
42
32
12
31
1
pancreatic beta cell
13
11
19
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 83 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download