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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
184
single cell RNA-seq
155
ChIP-seq
136
total RNA-seq
48
snATAC-seq
47
WGBS
30
DNase-seq
6
Hi-C
5
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
322
Transcription
279
DNA accessibility
155
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
117
histone
117
histone modification
62
narrow histone mark
55
broad histone mark
28
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
January, 2018
1
November, 2018
Available data
413
fastq
403
bam
370
bigWig
174
bed narrowPeak
160
tsv
153
zippedFastqFolder
100
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
33
bed bed3+
16
tagAlign
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
815
Homo sapiens
Biosample type
2573
tissue
807
primary cell
657
cell line
347
in vitro differentiated cells
10
stem cell
Organ
393
epithelium
346
pancreas
32
vasculature
31
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
musculature of body
8
heart
4
eye
Project
490
AMP
324
HPAP
2
community
1
ITG
Genome assembly (visualization)
376
hg19
332
GRCh38
1
hg18
Lab
490
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
month_released!
July, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
817 results
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Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
RRBS
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
pancreatic acinar cell
9
12
8
4
1
+ See 74 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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