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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
249
ChIP-seq
188
ATAC-seq
184
single cell RNA-seq
171
total RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
359
Transcription
276
DNA accessibility
249
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
239
histone
239
histone modification
123
broad histone mark
116
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
31
October, 2019
28
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
March, 2023
3
October, 2022
2
December, 2017
2
October, 2018
1
January, 2018
1
November, 2018
Available data
606
bigWig
579
bam
320
fastq
297
bed narrowPeak
259
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
39
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
972
Homo sapiens
Biosample type
2495
tissue
965
primary cell
573
cell line
341
in vitro differentiated cells
9
stem cell
Organ
348
epithelium
297
pancreas
37
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
248
HPAP
204
T1D
2
community
1
ITG
Genome assembly (visualization)
620
hg19
535
GRCh38
1
hg18
Lab
487
AMP-T2D consortium
248
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
44
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2023
target.investigated_as!
control
BIOSAMPLE
ASSAY
974 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
7
35
12
25
31
1
pancreatic beta cell
7
23
12
11
16
1
CD8-positive, alpha-beta T cell
30
2
4
1
+ See 87 more…
stem cell
hESC
2
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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