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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
23
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
21
October, 2019
6
November, 2017
July, 2019
4
June, 2019
March, 2020
Available data
30
bam
25
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
6
bed bed3+
6
fastq
1
hic
1
tar
Organism
31
Homo sapiens
Biosample type
123
tissue
66
cell line
31
primary cell
0
stem cell
Organ
392
epithelium
346
pancreas
31
connective tissue
31
vasculature
29
kidney
26
blood vessel
21
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
31
AMP
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
July, 2019
March, 2020
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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