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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
July, 2019
June, 2019
1
October, 2019
Available data
10
bam
9
bigWig
5
tsv
4
bed bed3+
4
bed narrowPeak
4
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
12
Homo sapiens
Biosample type
401
cell line
361
tissue
15
in vitro differentiated cells
12
primary cell
0
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
connective tissue
23
kidney
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
12
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
June, 2019
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
12 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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