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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
3
single cell RNA-seq
Assay category
33
DNA binding
3
Transcription
Target of assay
239
histone
239
histone modification
123
broad histone mark
116
narrow histone mark
36
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
13
August, 2017
8
June, 2019
3
July, 2019
3
May, 2021
3
November, 2017
3
October, 2019
1
August, 2021
1
December, 2017
1
May, 2019
Available data
33
bam
17
fastq
10
bigWig
3
tsv
2
tagAlign
1
bed bed3+
Organism
36
Homo sapiens
Biosample type
176
tissue
83
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
21
epithelium
12
pancreas
6
brain
4
vasculature
3
blood vessel
3
connective tissue
3
kidney
2
heart
2
musculature of body
2
vein
1
eye
1
liver
Project
36
AMP
Genome assembly (visualization)
11
hg19
4
GRCh38
Lab
33
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
organ_slims!
nerve
organ_slims!!
nerve
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
2
cerebellar granule cell
2
+ See 14 more…
stem cell
hESC
1
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