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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
757
ChIP-seq
242
ATAC-seq
206
DNase-seq
3
FAIRE-seq
Assay category
757
DNA binding
451
DNA accessibility
Target of assay
675
histone modification
674
histone
347
narrow histone mark
327
broad histone mark
82
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
210
June, 2019
172
October, 2019
127
May, 2021
99
August, 2017
97
May, 2019
67
August, 2021
65
April, 2019
November, 2017
63
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
9
February, 2021
July, 2019
6
January, 2019
5
September, 2017
3
December, 2018
2
March, 2020
2
November, 2020
Available data
2356
bam
2234
bigWig
1281
tsv
1208
bed narrowPeak
777
fastq
605
bigBed narrowPeak
272
tagAlign
250
bed broadPeak
238
bed bed3+
219
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
17
hic
14
bedpe bed3+
12
bed bedMethyl
12
bigBed bedMethyl
8
csv
6
bed bed3
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
1202
Homo sapiens
Biosample type
919
tissue
289
primary cell
155
cell line
132
in vitro differentiated cells
2
stem cell
Organ
191
pancreas
175
heart
174
kidney
138
brain
119
liver
115
vasculature
114
epithelium
113
blood vessel
92
limb
61
artery
60
musculature of body
33
eye
30
connective tissue
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
1122
AMP
86
T1D
Genome assembly (visualization)
1076
GRCh38
1046
hg19
Lab
952
AMP-T2D consortium
132
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Audit category:
29
inconsistent ontology term
27
inconsistent control
Audit category:
36
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
November, 2017
BIOSAMPLE
ASSAY
1208 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
islet of Langerhans
20
37
1
1
left cardiac atrium
40
1
coronary artery
3
35
2
+ See 129 more…
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
+ See 29 more…
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