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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
294
ChIP-seq
217
total RNA-seq
134
single cell RNA-seq
53
ATAC-seq
27
snATAC-seq
14
WGBS
10
DNase-seq
4
RRBS
2
FAIRE-seq
Assay category
351
Transcription
294
DNA binding
92
DNA accessibility
18
DNA methylation
Target of assay
141
histone modification
140
histone
78
transcription factor
75
control
74
broad histone mark
66
narrow histone mark
20
RNA binding protein
3
chromatin remodeller
Date released
233
August, 2017
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
48
December, 2017
45
February, 2021
44
April, 2018
41
September, 2020
24
May, 2022
18
November, 2018
16
October, 2017
11
September, 2017
9
November, 2017
August, 2020
3
August, 2018
3
June, 2018
1
March, 2019
Available data
2492
bam
2362
bigWig
1345
tsv
1265
bed narrowPeak
755
fastq
657
bigBed narrowPeak
338
tagAlign
261
bed broadPeak
241
bed bed3+
224
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
748
Homo sapiens
Biosample type
427
cell line
402
primary cell
353
tissue
141
in vitro differentiated cells
4
stem cell
Organ
464
pancreas
231
epithelium
83
liver
46
connective tissue
43
adipose tissue
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
593
AMP
162
HPAP
Genome assembly (visualization)
506
hg19
486
GRCh38
Lab
567
AMP-T2D consortium
162
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
27
inconsistent control
7
inconsistent ontology term
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
755 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
12
8
6
Langerhans cell
34
27
pancreatic beta cell
13
21
12
8
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 18 more…
tissue
islet of Langerhans
28
97
6
20
1
1
liver
67
1
2
1
body of pancreas
33
4
2
2
pancreas
16
2
1
omental fat pad
11
1
1
+ See 7 more…
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